.. DO NOT EDIT.
.. THIS FILE WAS AUTOMATICALLY GENERATED BY SPHINX-GALLERY.
.. TO MAKE CHANGES, EDIT THE SOURCE PYTHON FILE:
.. "python_module/08_tracking_manipulation/pet_run_a_tracking.py"
.. LINE NUMBERS ARE GIVEN BELOW.

.. only:: html

    .. note::
        :class: sphx-glr-download-link-note

        :ref:`Go to the end <sphx_glr_download_python_module_08_tracking_manipulation_pet_run_a_tracking.py>`
        to download the full example code. or to run this example in your browser via Binder

.. rst-class:: sphx-glr-example-title

.. _sphx_glr_python_module_08_tracking_manipulation_pet_run_a_tracking.py:


Track in python
===============

This example didn't replace EddyTracking, we remove check that application do and also postprocessing step.

.. GENERATED FROM PYTHON SOURCE LINES 9-15

.. code-block:: Python


    from py_eddy_tracker.data import get_remote_demo_sample
    from py_eddy_tracker.featured_tracking.area_tracker import AreaTracker
    from py_eddy_tracker.gui import GUI
    from py_eddy_tracker.tracking import Correspondances








.. GENERATED FROM PYTHON SOURCE LINES 16-19

Get remote data, we will keep only 180 first days,
`get_remote_demo_sample` function is only to get demo dataset, in your own case give a list of identification filename
and don't mix cyclonic and anticyclonic files.

.. GENERATED FROM PYTHON SOURCE LINES 19-23

.. code-block:: Python

    file_objects = get_remote_demo_sample(
        "eddies_med_adt_allsat_dt2018/Anticyclonic_2010_2011_2012"
    )[:180]








.. GENERATED FROM PYTHON SOURCE LINES 24-25

We run a traking with a tracker which use contour overlap

.. GENERATED FROM PYTHON SOURCE LINES 25-33

.. code-block:: Python

    c = Correspondances(datasets=file_objects, class_method=AreaTracker, virtual=3)
    c.track()
    c.prepare_merging()
    # We have now an eddy object
    eddies_area_tracker = c.merge(raw_data=False)
    eddies_area_tracker.virtual[:] = eddies_area_tracker.time == 0
    eddies_area_tracker.filled_by_interpolation(eddies_area_tracker.virtual == 1)








.. GENERATED FROM PYTHON SOURCE LINES 34-35

We run a traking with default tracker

.. GENERATED FROM PYTHON SOURCE LINES 35-42

.. code-block:: Python

    c = Correspondances(datasets=file_objects, virtual=3)
    c.track()
    c.prepare_merging()
    eddies_default_tracker = c.merge(raw_data=False)
    eddies_default_tracker.virtual[:] = eddies_default_tracker.time == 0
    eddies_default_tracker.filled_by_interpolation(eddies_default_tracker.virtual == 1)








.. GENERATED FROM PYTHON SOURCE LINES 43-44

Start GUI to compare tracking

.. GENERATED FROM PYTHON SOURCE LINES 44-52

.. code-block:: Python

    g = GUI(
        Acyc_area_tracker=eddies_area_tracker, Acyc_default_tracker=eddies_default_tracker
    )
    g.now = 22000
    g.bbox = 0, 9, 36, 40
    g.adjust()
    g.show()




.. image-sg:: /python_module/08_tracking_manipulation/images/sphx_glr_pet_run_a_tracking_001.png
   :alt: pet run a tracking
   :srcset: /python_module/08_tracking_manipulation/images/sphx_glr_pet_run_a_tracking_001.png
   :class: sphx-glr-single-img





.. GENERATED FROM PYTHON SOURCE LINES 53-54

Start GUI with area tracker

.. GENERATED FROM PYTHON SOURCE LINES 54-60

.. code-block:: Python

    g = GUI(Acyc_area_tracker=eddies_area_tracker)
    g.now = 22000
    g.bbox = 0, 9, 36, 40
    g.adjust()
    g.show()




.. image-sg:: /python_module/08_tracking_manipulation/images/sphx_glr_pet_run_a_tracking_002.png
   :alt: pet run a tracking
   :srcset: /python_module/08_tracking_manipulation/images/sphx_glr_pet_run_a_tracking_002.png
   :class: sphx-glr-single-img





.. GENERATED FROM PYTHON SOURCE LINES 61-62

Start GUI with default one

.. GENERATED FROM PYTHON SOURCE LINES 62-67

.. code-block:: Python

    g = GUI(Acyc_default_tracker=eddies_default_tracker)
    g.now = 22000
    g.bbox = 0, 9, 36, 40
    g.adjust()
    g.show()



.. image-sg:: /python_module/08_tracking_manipulation/images/sphx_glr_pet_run_a_tracking_003.png
   :alt: pet run a tracking
   :srcset: /python_module/08_tracking_manipulation/images/sphx_glr_pet_run_a_tracking_003.png
   :class: sphx-glr-single-img






.. rst-class:: sphx-glr-timing

   **Total running time of the script:** (0 minutes 6.799 seconds)


.. _sphx_glr_download_python_module_08_tracking_manipulation_pet_run_a_tracking.py:

.. only:: html

  .. container:: sphx-glr-footer sphx-glr-footer-example

    .. container:: binder-badge

      .. image:: images/binder_badge_logo.svg
        :target: https://mybinder.org/v2/gh/AntSimi/py-eddy-tracker/master?urlpath=lab/tree/notebooks/python_module/08_tracking_manipulation/pet_run_a_tracking.ipynb
        :alt: Launch binder
        :width: 150 px

    .. container:: sphx-glr-download sphx-glr-download-jupyter

      :download:`Download Jupyter notebook: pet_run_a_tracking.ipynb <pet_run_a_tracking.ipynb>`

    .. container:: sphx-glr-download sphx-glr-download-python

      :download:`Download Python source code: pet_run_a_tracking.py <pet_run_a_tracking.py>`

    .. container:: sphx-glr-download sphx-glr-download-zip

      :download:`Download zipped: pet_run_a_tracking.zip <pet_run_a_tracking.zip>`


.. only:: html

 .. rst-class:: sphx-glr-signature

    `Gallery generated by Sphinx-Gallery <https://sphinx-gallery.github.io>`_